SNP Detail For rs60490158
1.Mapping Information
Human SNP ID rs60490158
Human chromosome chr2
Human SNP position 23945318
Pig chromosome chr3
Pig SNP position 121975903
2.Annotation Information
PubMed ID25865494
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25865494
StudyGenome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.
Disease/TraitSitting height ratio
Initial sample3,545 African Americans individuals, 12,965 European ancestry women, 8,625 European ancestry men
Replication sampleNA
Region2p23.3
Chromosome idchr2
Chromosome position23945318
Reported geneNR
Mapped geneUBXN2A
Upstream gene id
Downstream gene id
SNP gene ids165324
Upstream gene distance
Downstream gene distance
SNP risk allelers60490158-A
SNPsrs60490158
Merged0
SNP id current60490158
Contextintron_variant
Intergenic0
Allele frequency0.459
P value0.0000005
Pvalue mlog6.30102999566398
P value text(EA, men)
Or beta0.077
%95 Ci[0.048-0.106] unit increase
PlatformAffymetrix, Illumina [up to 10250422] (imputed)
CNVN
Mapped traitsitting height ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007118
Study accessionGCST002843