SNP Detail For rs6048205
1.Mapping Information
Human SNP ID rs6048205
Human chromosome chr20
Human SNP position 22578963
Pig chromosome chr17
Pig SNP position 34051303
2.Annotation Information
PubMed ID22581228
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22581228
StudyA genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
Disease/TraitFasting glucose-related traits (interaction with BMI)
Initial sampleUp to 58,074 European ancestry individuals
Replication sampleUp tp 38,422 European ancestry individuals
Region20p11.21
Chromosome idchr20
Chromosome position22578963
Reported geneFOXA2
Mapped geneLINC00261 - FOXA2
Upstream gene id140828
Downstream gene id3170
SNP gene ids
Upstream gene distance321
Downstream gene distance2041
SNP risk allelers6048205-?
SNPsrs6048205
Merged0
SNP id current6048205
Contextupstream_gene_variant
Intergenic1
Allele frequency
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2400000] (imputed)
CNVN
Mapped traitbody mass index, fasting blood glucose measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340, http://www.ebi.ac.uk/efo/EFO_0004465
Study accessionGCST001527