Human SNP ID | rs6048205 |
---|---|
Human chromosome | chr20 |
Human SNP position | 22578963 |
Pig chromosome | chr17 |
Pig SNP position | 34051303 |
PubMed ID | 22581228 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22581228 |
Study | A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. |
Disease/Trait | Fasting glucose-related traits (interaction with BMI) |
Initial sample | Up to 58,074 European ancestry individuals |
Replication sample | Up tp 38,422 European ancestry individuals |
Region | 20p11.21 |
Chromosome id | chr20 |
Chromosome position | 22578963 |
Reported gene | FOXA2 |
Mapped gene | LINC00261 - FOXA2 |
Upstream gene id | 140828 |
Downstream gene id | 3170 |
SNP gene ids | |
Upstream gene distance | 321 |
Downstream gene distance | 2041 |
SNP risk allele | rs6048205-? |
SNPs | rs6048205 |
Merged | 0 |
SNP id current | 6048205 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2400000] (imputed) |
CNV | N |
Mapped trait | body mass index, fasting blood glucose measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340, http://www.ebi.ac.uk/efo/EFO_0004465 |
Study accession | GCST001527 |