SNP Detail For rs6044834
1.Mapping Information
Human SNP ID rs6044834
Human chromosome chr20
Human SNP position 17455828
Pig chromosome chr17
Pig SNP position 29310906
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region20p12.1
Chromosome idchr20
Chromosome position17455828
Reported genePCSK2
Mapped genePCSK2
Upstream gene id
Downstream gene id
SNP gene ids5126
Upstream gene distance
Downstream gene distance
SNP risk allelers6044834-C
SNPsrs6044834
Merged0
SNP id current6044834
Contextintron_variant
Intergenic0
Allele frequency0.069
P value0.00000008
Pvalue mlog7.09691001300805
P value text(Total antioxidants )
Or beta0.04
%95 Ci[NR] mM increase
PlatformIllumina [899892]
CNVN
Mapped traitantioxidant measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005119
Study accessionGCST001762