SNP Detail For rs6041428
1.Mapping Information
Human SNP ID rs6041428
Human chromosome chr20
Human SNP position 12525698
Pig chromosome chr17
Pig SNP position 23883112
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitVascular brain injury
Initial sampleup to 2,940 individuals
Replication sampleNA
Region20p12.1
Chromosome idchr20
Chromosome position12525698
Reported geneintergenic
Mapped geneLOC105372534 - LOC105372533
Upstream gene id105372534
Downstream gene id105372533
SNP gene ids
Upstream gene distance132004
Downstream gene distance124147
SNP risk allelers6041428-G
SNPsrs6041428
Merged0
SNP id current6041428
Contextintergenic_variant
Intergenic1
Allele frequency0.9842
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.256
%95 Ci[0.71-1.8] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitvascular brain injury measurement, vascular brain injury
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006800, http://www.ebi.ac.uk/efo/EFO_0006791
Study accessionGCST002590