Human SNP ID | rs603965 |
---|---|
Human chromosome | chr11 |
Human SNP position | 69648142 |
Pig chromosome | chr2 |
Pig SNP position | 2346816 |
PubMed ID | 23502783 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23502783 |
Study | The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. |
Disease/Trait | Multiple myeloma (IgH translocation) |
Initial sample | up to 1,660 European ancestry cases, 7,306 European ancestry controls |
Replication sample | |
Region | 11q13.3 |
Chromosome id | chr11 |
Chromosome position | 69648142 |
Reported gene | CCND1 |
Mapped gene | CCND1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 595 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs603965-G |
SNPs | rs603965 |
Merged | 1 |
SNP id current | 603965 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.00000000008 |
Pvalue mlog | 10.096910013008 |
P value text | (t11;14 vs. controls) |
Or beta | 1.82 |
%95 Ci | [1.52-2.19] |
Platform | Illumina [414804] (imputed) |
CNV | N |
Mapped trait | multiple myeloma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001378 |
Study accession | GCST001906 |
PubMed ID | 23502783 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23502783 |
Study | The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. |
Disease/Trait | Multiple myeloma (IgH translocation) |
Initial sample | up to 1,660 European ancestry cases, 7,306 European ancestry controls |
Replication sample | |
Region | 11q13.3 |
Chromosome id | chr11 |
Chromosome position | 69648142 |
Reported gene | CCND1 |
Mapped gene | CCND1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 595 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs603965-G |
SNPs | rs603965 |
Merged | 1 |
SNP id current | 603965 |
Context | splice_region_variant |
Intergenic | 0 |
Allele frequency | 0.55 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | (t11;14 vs non t11;14) |
Or beta | 1.95 |
%95 Ci | [1.61-2.38] |
Platform | Illumina [414804] (imputed) |
CNV | N |
Mapped trait | multiple myeloma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001378 |
Study accession | GCST001906 |