SNP Detail For rs603446
1.Mapping Information
Human SNP ID rs603446
Human chromosome chr11
Human SNP position 116783719
Pig chromosome chr9
Pig SNP position 49246396
2.Annotation Information
PubMed ID21909109
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21909109
StudyLarge-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
Disease/TraitTriglycerides
Initial sample12,545 Korean ancestry individuals
Replication sampleUp to 30,395 East Asian ancestry individuals
Region11q23.3
Chromosome idchr11
Chromosome position116783719
Reported geneZNF259, APOA1, APOC3, APOA4, APOA5, BUD13
Mapped geneZPR1
Upstream gene id
Downstream gene id
SNP gene ids8882
Upstream gene distance
Downstream gene distance
SNP risk allelers603446-T
SNPsrs603446
Merged0
SNP id current603446
Contextintron_variant
Intergenic0
Allele frequency0.23
P value2E-86
Pvalue mlog85.698970004336
P value text
Or beta0.0876
%95 Ci[0.079-0.096] mg/dL decrease
PlatformAffymetrix [~ 2200000] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST001230