SNP Detail For rs6030171
1.Mapping Information
Human SNP ID rs6030171
Human chromosome chr20
Human SNP position 42365454
Pig chromosome chr17
Pig SNP position 50011719
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position42365454
Reported geneNR
Mapped genePTPRT
Upstream gene id
Downstream gene id
SNP gene ids11122
Upstream gene distance
Downstream gene distance
SNP risk allelers6030171-C
SNPsrs6030171
Merged0
SNP id current6030171
Contextintron_variant
Intergenic0
Allele frequency0.359936573653761
P value0.000003
Pvalue mlog5.52287874528033
P value text(IGP7)
Or beta0.148
%95 Ci[0.086-0.21] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848