SNP Detail For rs602875
1.Mapping Information
Human SNP ID rs602875
Human chromosome chr6
Human SNP position 32605852
Pig chromosome chr7
Pig SNP position 29138781
2.Annotation Information
PubMed ID20018961
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/20018961
StudyGenomewide association study of leprosy.
Disease/TraitLeprosy
Initial sample706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls
Replication sample3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32605852
Reported geneHLA-DR-DQ
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance16016
Downstream gene distance31544
SNP risk allelers602875-A
SNPsrs602875
Merged0
SNP id current602875
Contextintron_variant
Intergenic1
Allele frequency0.68
P value5E-27
Pvalue mlog26.3010299956639
P value text
Or beta1.61
%95 Ci[1.39-1.61]
PlatformIllumina [491883]
CNVN
Mapped traitleprosy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001054
Study accessionGCST000546