Human SNP ID | rs602875 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32605852 |
Pig chromosome | chr7 |
Pig SNP position | 29138781 |
PubMed ID | 20018961 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/20018961 |
Study | Genomewide association study of leprosy. |
Disease/Trait | Leprosy |
Initial sample | 706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls |
Replication sample | 3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32605852 |
Reported gene | HLA-DR-DQ |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 16016 |
Downstream gene distance | 31544 |
SNP risk allele | rs602875-A |
SNPs | rs602875 |
Merged | 0 |
SNP id current | 602875 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.68 |
P value | 5E-27 |
Pvalue mlog | 26.3010299956639 |
P value text | |
Or beta | 1.61 |
%95 Ci | [1.39-1.61] |
Platform | Illumina [491883] |
CNV | N |
Mapped trait | leprosy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001054 |
Study accession | GCST000546 |