Human SNP ID | rs6028466 |
---|---|
Human chromosome | chr20 |
Human SNP position | 39500359 |
Pig chromosome | chr17 |
Pig SNP position | 47878565 |
PubMed ID | 21460395 |
---|---|
Journal | Cancer Prev Res (Phila) |
Link | www.ncbi.nlm.nih.gov/pubmed/21460395 |
Study | A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer. |
Disease/Trait | Telomere length |
Initial sample | 459 individuals |
Replication sample | 1,160 individuals |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 39500359 |
Reported gene | DHX35 |
Mapped gene | LOC339568 - LOC102724950 |
Upstream gene id | 339568 |
Downstream gene id | 102724950 |
SNP gene ids | |
Upstream gene distance | 275611 |
Downstream gene distance | 154964 |
SNP risk allele | rs6028466-? |
SNPs | rs6028466 |
Merged | 0 |
SNP id current | 6028466 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 0.19 |
%95 Ci | [NR] unit increase |
Platform | Illumina [312531] |
CNV | N |
Mapped trait | telomere length |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004505 |
Study accession | GCST001024 |