SNP Detail For rs6028466
1.Mapping Information
Human SNP ID rs6028466
Human chromosome chr20
Human SNP position 39500359
Pig chromosome chr17
Pig SNP position 47878565
2.Annotation Information
PubMed ID21460395
JournalCancer Prev Res (Phila)
Linkwww.ncbi.nlm.nih.gov/pubmed/21460395
StudyA genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.
Disease/TraitTelomere length
Initial sample459 individuals
Replication sample1,160 individuals
Region20q12
Chromosome idchr20
Chromosome position39500359
Reported geneDHX35
Mapped geneLOC339568 - LOC102724950
Upstream gene id339568
Downstream gene id102724950
SNP gene ids
Upstream gene distance275611
Downstream gene distance154964
SNP risk allelers6028466-?
SNPsrs6028466
Merged0
SNP id current6028466
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.19
%95 Ci[NR] unit increase
PlatformIllumina [312531]
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST001024