SNP Detail For rs6028335
1.Mapping Information
Human SNP ID rs6028335
Human chromosome chr20
Human SNP position 39216834
Pig chromosome chr17
Pig SNP position 47642166
2.Annotation Information
PubMed ID22488850
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22488850
StudyGenome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.
Disease/TraitAlcohol and nictotine co-dependence
Initial sample818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position39216834
Reported geneLOC339568
Mapped geneLOC339568
Upstream gene id
Downstream gene id
SNP gene ids339568
Upstream gene distance
Downstream gene distance
SNP risk allelers6028335-?
SNPsrs6028335
Merged0
SNP id current6028335
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [805814]
CNVN
Mapped traitalcohol and nicotine codependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004776
Study accessionGCST001471