Human SNP ID | rs6027755 |
---|---|
Human chromosome | chr20 |
Human SNP position | 60693652 |
Pig chromosome | chr17 |
Pig SNP position | 68022435 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (other) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 20q13.33 |
Chromosome id | chr20 |
Chromosome position | 60693652 |
Reported gene | intergenic |
Mapped gene | MIR548AG2 - LOC105372699 |
Upstream gene id | 100616440 |
Downstream gene id | 105372699 |
SNP gene ids | |
Upstream gene distance | 129027 |
Downstream gene distance | 54638 |
SNP risk allele | rs6027755-A |
SNPs | rs6027755 |
Merged | 0 |
SNP id current | 6027755 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Fibrosis) |
Or beta | 1.09 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000765 |