SNP Detail For rs6027755
1.Mapping Information
Human SNP ID rs6027755
Human chromosome chr20
Human SNP position 60693652
Pig chromosome chr17
Pig SNP position 68022435
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (other)
Initial sample236 European ancestry cases
Replication sampleNA
Region20q13.33
Chromosome idchr20
Chromosome position60693652
Reported geneintergenic
Mapped geneMIR548AG2 - LOC105372699
Upstream gene id100616440
Downstream gene id105372699
SNP gene ids
Upstream gene distance129027
Downstream gene distance54638
SNP risk allelers6027755-A
SNPsrs6027755
Merged0
SNP id current6027755
Contextintergenic_variant
Intergenic1
Allele frequency0.39
P value0.000006
Pvalue mlog5.22184874961635
P value text(Fibrosis)
Or beta1.09
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000765