SNP Detail For rs6027511
1.Mapping Information
Human SNP ID rs6027511
Human chromosome chr20
Human SNP position 60323151
Pig chromosome chr17
Pig SNP position 67580927
2.Annotation Information
PubMed ID22903471
JournalBrain Imaging Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/22903471
StudyGenome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
Disease/TraitLentiform nucleus volume
Initial sample162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families
Replication sampleNA
Region20q13.33
Chromosome idchr20
Chromosome position60323151
Reported geneintergenic
Mapped geneMIR646HG - LOC105372697
Upstream gene id284757
Downstream gene id105372697
SNP gene ids
Upstream gene distance895
Downstream gene distance9223
SNP risk allelers6027511-C
SNPsrs6027511
Merged0
SNP id current6027511
Contextintron_variant
Intergenic1
Allele frequency0.17
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta122.24
%95 Ci[NR] unit decrease
PlatformIllumina [2380200] (imputed)
CNVN
Mapped traitlentiform nucleus measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004913
Study accessionGCST001640