Human SNP ID | rs6027511 |
---|---|
Human chromosome | chr20 |
Human SNP position | 60323151 |
Pig chromosome | chr17 |
Pig SNP position | 67580927 |
PubMed ID | 22903471 |
---|---|
Journal | Brain Imaging Behav |
Link | www.ncbi.nlm.nih.gov/pubmed/22903471 |
Study | Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects. |
Disease/Trait | Lentiform nucleus volume |
Initial sample | 162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families |
Replication sample | NA |
Region | 20q13.33 |
Chromosome id | chr20 |
Chromosome position | 60323151 |
Reported gene | intergenic |
Mapped gene | MIR646HG - LOC105372697 |
Upstream gene id | 284757 |
Downstream gene id | 105372697 |
SNP gene ids | |
Upstream gene distance | 895 |
Downstream gene distance | 9223 |
SNP risk allele | rs6027511-C |
SNPs | rs6027511 |
Merged | 0 |
SNP id current | 6027511 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 122.24 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [2380200] (imputed) |
CNV | N |
Mapped trait | lentiform nucleus measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004913 |
Study accession | GCST001640 |