Human SNP ID | rs6027506 |
---|---|
Human chromosome | chr20 |
Human SNP position | 60321657 |
Pig chromosome | chr17 |
Pig SNP position | 67579862 |
PubMed ID | 23028342 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23028342 |
Study | New susceptibility loci associated with kidney disease in type 1 diabetes. |
Disease/Trait | Type 1 diabetes nephropathy |
Initial sample | Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy |
Replication sample | Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy |
Region | 20q13.33 |
Chromosome id | chr20 |
Chromosome position | 60321657 |
Reported gene | RP5-1043L13.1 |
Mapped gene | MIR646HG |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 284757 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6027506-A |
SNPs | rs6027506 |
Merged | 0 |
SNP id current | 6027506 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.63 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (ESRD vs. non-ESRD) |
Or beta | 1.22 |
%95 Ci | [1.12-1.32] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | type 1 diabetes nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004996 |
Study accession | GCST001688 |