SNP Detail For rs6027506
1.Mapping Information
Human SNP ID rs6027506
Human chromosome chr20
Human SNP position 60321657
Pig chromosome chr17
Pig SNP position 67579862
2.Annotation Information
PubMed ID23028342
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23028342
StudyNew susceptibility loci associated with kidney disease in type 1 diabetes.
Disease/TraitType 1 diabetes nephropathy
Initial sampleUp to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy
Replication sampleUp to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy
Region20q13.33
Chromosome idchr20
Chromosome position60321657
Reported geneRP5-1043L13.1
Mapped geneMIR646HG
Upstream gene id
Downstream gene id
SNP gene ids284757
Upstream gene distance
Downstream gene distance
SNP risk allelers6027506-A
SNPsrs6027506
Merged0
SNP id current6027506
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.63
P value0.000005
Pvalue mlog5.30102999566398
P value text(ESRD vs. non-ESRD)
Or beta1.22
%95 Ci[1.12-1.32]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittype 1 diabetes nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004996
Study accessionGCST001688