Human SNP ID | rs6025590 |
---|---|
Human chromosome | chr20 |
Human SNP position | 57495449 |
Pig chromosome | chr17 |
Pig SNP position | 65023428 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 20q13.31 |
Chromosome id | chr20 |
Chromosome position | 57495449 |
Reported gene | CTCFL, HMG1L1 |
Mapped gene | LOC105372688 - CTCFL |
Upstream gene id | 105372688 |
Downstream gene id | 140690 |
SNP gene ids | |
Upstream gene distance | 31924 |
Downstream gene distance | 516 |
SNP risk allele | rs6025590-A |
SNPs | rs6025590 |
Merged | 0 |
SNP id current | 6025590 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.308 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (Sedentary&light activity ) |
Or beta | 0.04 |
%95 Ci | [NR] min/d increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | physical activity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003940 |
Study accession | GCST001762 |