SNP Detail For rs6025590
1.Mapping Information
Human SNP ID rs6025590
Human chromosome chr20
Human SNP position 57495449
Pig chromosome chr17
Pig SNP position 65023428
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region20q13.31
Chromosome idchr20
Chromosome position57495449
Reported geneCTCFL, HMG1L1
Mapped geneLOC105372688 - CTCFL
Upstream gene id105372688
Downstream gene id140690
SNP gene ids
Upstream gene distance31924
Downstream gene distance516
SNP risk allelers6025590-A
SNPsrs6025590
Merged0
SNP id current6025590
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.308
P value0.00000004
Pvalue mlog7.39794000867203
P value text(Sedentary&light activity )
Or beta0.04
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762