SNP Detail For rs60250264
1.Mapping Information
Human SNP ID rs60250264
Human chromosome chr9
Human SNP position 8897187
Pig chromosome chr1
Pig SNP position 238356674
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region9p24.1
Chromosome idchr9
Chromosome position8897187
Reported geneNR
Mapped genePTPRD
Upstream gene id
Downstream gene id
SNP gene ids5789
Upstream gene distance
Downstream gene distance
SNP risk allelers60250264-?
SNPsrs60250264
Merged
SNP id current60250264
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Latino)
Or beta1.3059
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957