SNP Detail For rs6022786
1.Mapping Information
Human SNP ID rs6022786
Human chromosome chr20
Human SNP position 53830764
Pig chromosome chr17
Pig SNP position 61554776
2.Annotation Information
PubMed ID22885925
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22885925
StudyGenome-wide association study identifies eight new risk loci for polycystic ovary syndrome.
Disease/TraitPolycystic ovary syndrome
Initial sample2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls
Replication sample8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls
Region20q13.2
Chromosome idchr20
Chromosome position53830764
Reported geneSUMO1P1
Mapped geneLOC105372673 - LOC105372674
Upstream gene id105372673
Downstream gene id105372674
SNP gene ids
Upstream gene distance79513
Downstream gene distance14750
SNP risk allelers6022786-A
SNPsrs6022786
Merged0
SNP id current6022786
Contextregulatory_region_variant
Intergenic1
Allele frequency0.339
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.13
%95 Ci[NR]
PlatformAffymetrix [NR] (imputed)
CNVN
Mapped traitpolycystic ovary syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000660
Study accessionGCST001634