Human SNP ID | rs6022786 |
---|---|
Human chromosome | chr20 |
Human SNP position | 53830764 |
Pig chromosome | chr17 |
Pig SNP position | 61554776 |
PubMed ID | 22885925 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22885925 |
Study | Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome. |
Disease/Trait | Polycystic ovary syndrome |
Initial sample | 2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls |
Replication sample | 8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls |
Region | 20q13.2 |
Chromosome id | chr20 |
Chromosome position | 53830764 |
Reported gene | SUMO1P1 |
Mapped gene | LOC105372673 - LOC105372674 |
Upstream gene id | 105372673 |
Downstream gene id | 105372674 |
SNP gene ids | |
Upstream gene distance | 79513 |
Downstream gene distance | 14750 |
SNP risk allele | rs6022786-A |
SNPs | rs6022786 |
Merged | 0 |
SNP id current | 6022786 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.339 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.13 |
%95 Ci | [NR] |
Platform | Affymetrix [NR] (imputed) |
CNV | N |
Mapped trait | polycystic ovary syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000660 |
Study accession | GCST001634 |