Human SNP ID | rs60188314 |
---|---|
Human chromosome | chr5 |
Human SNP position | 172111740 |
Pig chromosome | chr16 |
Pig SNP position | 56335475 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 5q35.1 |
Chromosome id | chr5 |
Chromosome position | 172111740 |
Reported gene | NR |
Mapped gene | STK10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6793 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs60188314-? |
SNPs | rs60188314 |
Merged | |
SNP id current | 60188314 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.4404 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |
PubMed ID | 26053186 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxy-1-methylpropylmercapturic acid levels in smokers |
Initial sample | 361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 5q35.1 |
Chromosome id | chr5 |
Chromosome position | 172111740 |
Reported gene | NR |
Mapped gene | STK10 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6793 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs60188314-? |
SNPs | rs60188314 |
Merged | |
SNP id current | 60188314 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.4624 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015 |
Study accession | GCST002957 |