SNP Detail For rs60188314
1.Mapping Information
Human SNP ID rs60188314
Human chromosome chr5
Human SNP position 172111740
Pig chromosome chr16
Pig SNP position 56335475
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position172111740
Reported geneNR
Mapped geneSTK10
Upstream gene id
Downstream gene id
SNP gene ids6793
Upstream gene distance
Downstream gene distance
SNP risk allelers60188314-?
SNPsrs60188314
Merged
SNP id current60188314
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.4404
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position172111740
Reported geneNR
Mapped geneSTK10
Upstream gene id
Downstream gene id
SNP gene ids6793
Upstream gene distance
Downstream gene distance
SNP risk allelers60188314-?
SNPsrs60188314
Merged
SNP id current60188314
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text
Or beta0.4624
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957