SNP Detail For rs601338
1.Mapping Information
Human SNP ID rs601338
Human chromosome chr19
Human SNP position 48703417
Pig chromosome chr6
Pig SNP position 49790474
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region19q13.33
Chromosome idchr19
Chromosome position48703417
Reported geneFUT2
Mapped geneFUT2
Upstream gene id
Downstream gene id
SNP gene ids2524
Upstream gene distance
Downstream gene distance
SNP risk allelers601338-A
SNPsrs601338
Merged0
SNP id current601338
Contextstop_gained
Intergenic0
Allele frequency0.43
P value0.00000000003
Pvalue mlog10.5228787452803
P value text(ADpSGEGDFXAEGGGVR)
Or beta0.041
%95 Ci[0.029-0.053] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite ratios
Initial sampleUp to 5,591 European ancestry individuals
Replication sampleUp to 1,767 European ancestry individuals
Region19q13.33
Chromosome idchr19
Chromosome position48703417
Reported geneFUT2
Mapped geneFUT2
Upstream gene id
Downstream gene id
SNP gene ids2524
Upstream gene distance
Downstream gene distance
SNP risk allelers601338-A
SNPsrs601338
Merged0
SNP id current601338
Contextstop_gained
Intergenic0
Allele frequency0.43
P value2E-20
Pvalue mlog19.698970004336
P value text(ADSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)
Or beta0.055
%95 Ci[0.043-0.067] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002442