Human SNP ID | rs600231 |
---|---|
Human chromosome | chr11 |
Human SNP position | 65493175 |
Pig chromosome | chr2 |
Pig SNP position | 5801987 |
PubMed ID | 22504420 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 11q13.1 |
Chromosome id | chr11 |
Chromosome position | 65493175 |
Reported gene | SCYL1 |
Mapped gene | LOC105369346 - MALAT1 |
Upstream gene id | 105369346 |
Downstream gene id | 378938 |
SNP gene ids | |
Upstream gene distance | 3207 |
Downstream gene distance | 4587 |
SNP risk allele | rs600231-A |
SNPs | rs600231 |
Merged | 0 |
SNP id current | 600231 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.7 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (FNBMD) |
Or beta | 0.02 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |