SNP Detail For rs600231
1.Mapping Information
Human SNP ID rs600231
Human chromosome chr11
Human SNP position 65493175
Pig chromosome chr2
Pig SNP position 5801987
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region11q13.1
Chromosome idchr11
Chromosome position65493175
Reported geneSCYL1
Mapped geneLOC105369346 - MALAT1
Upstream gene id105369346
Downstream gene id378938
SNP gene ids
Upstream gene distance3207
Downstream gene distance4587
SNP risk allelers600231-A
SNPsrs600231
Merged0
SNP id current600231
Contextupstream_gene_variant
Intergenic1
Allele frequency0.7
P value0.000004
Pvalue mlog5.39794000867203
P value text(FNBMD)
Or beta0.02
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482