Human SNP ID | rs6001930 |
---|---|
Human chromosome | chr22 |
Human SNP position | 40480230 |
Pig chromosome | chr5 |
Pig SNP position | 5153482 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 22q13.1 |
Chromosome id | chr22 |
Chromosome position | 40480230 |
Reported gene | MKL1 |
Mapped gene | MKL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57591 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6001930-C |
SNPs | rs6001930 |
Merged | 0 |
SNP id current | 6001930 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 9E-19 |
Pvalue mlog | 18.0457574905606 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.09-1.16] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |
PubMed ID | 23535733 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535733 |
Study | Genome-wide association studies identify four ER negative-specific breast cancer risk loci. |
Disease/Trait | Breast cancer |
Initial sample | 4,193 European ancestry cases, 35,194 European ancestry controls |
Replication sample | 6,514 European ancestry cases, 41,455 European ancestry controls |
Region | 22q13.1 |
Chromosome id | chr22 |
Chromosome position | 40480230 |
Reported gene | MKL1 |
Mapped gene | MKL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57591 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6001930-C |
SNPs | rs6001930 |
Merged | 0 |
SNP id current | 6001930 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.107 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.08-1.20] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001930 |