SNP Detail For rs59920395
1.Mapping Information
Human SNP ID rs59920395
Human chromosome chr5
Human SNP position 3650229
Pig chromosome chr16
Pig SNP position 84026189
2.Annotation Information
PubMed ID26718567
JournalNeurology
Linkwww.ncbi.nlm.nih.gov/pubmed/26718567
StudyShared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.
Disease/TraitThrombin-antithrombin complex levels in ischemic stroke
Initial sampleup to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases
Replication sampleNA
Region5p15.33
Chromosome idchr5
Chromosome position3650229
Reported geneNR
Mapped geneIRX1 - LOC105374625
Upstream gene id79192
Downstream gene id105374625
SNP gene ids
Upstream gene distance48826
Downstream gene distance128118
SNP risk allelers59920395-?
SNPsrs59920395
Merged
SNP id current59920395
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [7500450] (imputed)
CNVN
Mapped traitIschemic stroke
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0002140
Study accessionGCST003233