SNP Detail For rs5980075
1.Mapping Information
Human SNP ID rs5980075
Human chromosome chrX
Human SNP position 14932409
Pig chromosome chrX
Pig SNP position 12443066
2.Annotation Information
PubMed ID23192594
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23192594
StudyGene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women__s Health Initiative SHARe Study.
Disease/TraitWaist-to-hip circumference ratio (interaction)
Initial sample8,203 African American females, 3,484 Hispanic females
Replication sampleNA
RegionXp22.2
Chromosome idchrX
Chromosome position14932409
Reported geneMOSPD2, LOC100128521
Mapped geneMOSPD2 - LOC102724092
Upstream gene id158747
Downstream gene id102724092
SNP gene ids
Upstream gene distance10243
Downstream gene distance299825
SNP risk allelers5980075-T
SNPsrs5980075
Merged0
SNP id current5980075
Contextintergenic_variant
Intergenic1
Allele frequency0.47
P value0.0000005
Pvalue mlog6.30102999566398
P value text(Hispanic, Dietary energy)
Or beta0.04
%95 Ci[0.03-0.06] unit increase
PlatformAffymetrix [706791]
CNVN
Mapped traitwaist-hip ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004343
Study accessionGCST001754