SNP Detail For rs59683676
1.Mapping Information
Human SNP ID rs59683676
Human chromosome chr15
Human SNP position 78541111
Pig chromosome chr7
Pig SNP position 52938297
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region15q25.1
Chromosome idchr15
Chromosome position78541111
Reported genePSMA4
Mapped genePSMA4
Upstream gene id
Downstream gene id
SNP gene ids5685
Upstream gene distance
Downstream gene distance
SNP risk allelers59683676-T
SNPsrs59683676
Merged0
SNP id current59683676
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.792
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta0.063
%95 CiNR unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region15q25.1
Chromosome idchr15
Chromosome position78541111
Reported genePSMA4
Mapped genePSMA4
Upstream gene id
Downstream gene id
SNP gene ids5685
Upstream gene distance
Downstream gene distance
SNP risk allelers59683676-T
SNPsrs59683676
Merged0
SNP id current59683676
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.792
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0.011
%95 Ciunit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264