SNP Detail For rs59586681
1.Mapping Information
Human SNP ID rs59586681
Human chromosome chr20
Human SNP position 2239664
Pig chromosome chr17
Pig SNP position 37662352
2.Annotation Information
PubMed ID24403052
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24403052
StudyGermline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.
Disease/TraitBasal cell carcinoma
Initial sample4,208 European ancestry cases, 109,408 European ancestry controls
Replication sampleup to 1,480 European ancestry cases, up to 4,610 European ancestry controls
Region20p13
Chromosome idchr20
Chromosome position2239664
Reported geneTGM3
Mapped geneLOC388780
Upstream gene id
Downstream gene id
SNP gene ids388780
Upstream gene distance
Downstream gene distance
SNP risk allelers59586681-T
SNPsrs59586681
Merged0
SNP id current59586681
Contextintergenic_variant
Intergenic0
Allele frequency0.61
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.16
%95 Ci[1.11-1.22]
PlatformIllumina [38500000] (imputed)
CNVN
Mapped traitbasal cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004193
Study accessionGCST002331