Human SNP ID | rs59586681 |
---|---|
Human chromosome | chr20 |
Human SNP position | 2239664 |
Pig chromosome | chr17 |
Pig SNP position | 37662352 |
PubMed ID | 24403052 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24403052 |
Study | Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma. |
Disease/Trait | Basal cell carcinoma |
Initial sample | 4,208 European ancestry cases, 109,408 European ancestry controls |
Replication sample | up to 1,480 European ancestry cases, up to 4,610 European ancestry controls |
Region | 20p13 |
Chromosome id | chr20 |
Chromosome position | 2239664 |
Reported gene | TGM3 |
Mapped gene | LOC388780 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388780 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs59586681-T |
SNPs | rs59586681 |
Merged | 0 |
SNP id current | 59586681 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.22] |
Platform | Illumina [38500000] (imputed) |
CNV | N |
Mapped trait | basal cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004193 |
Study accession | GCST002331 |