Human SNP ID | rs5945619 |
---|---|
Human chromosome | chrX |
Human SNP position | 51498820 |
Pig chromosome | chrX |
Pig SNP position | 50060231 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 18q12.1 x Xp11.22 |
Chromosome id | chr18 x X |
Chromosome position | 33347811 x 51498820 |
Reported gene | C18orf34 x NUDT10 |
Mapped gene | CCDC178 x NUDT11 - LINC01496 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6507016-? x rs5945619-? |
SNPs | rs6507016 x rs5945619 |
Merged | 0 |
SNP id current | |
Context | intron_variant x upstream_gene_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.2821 |
%95 Ci | [1.15-1.41] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |
PubMed ID | 18264097 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18264097 |
Study | Multiple newly identified loci associated with prostate cancer susceptibility. |
Disease/Trait | Prostate cancer |
Initial sample | 1,854 European ancestry cases, 1,894 European ancestry controls |
Replication sample | 3,268 European ancestry cases, 3,366 European ancestry controls |
Region | Xp11.22 |
Chromosome id | chrX |
Chromosome position | 51498820 |
Reported gene | NUDT10, NUDT11 |
Mapped gene | NUDT11 - LINC01496 |
Upstream gene id | 55190 |
Downstream gene id | 102723426 |
SNP gene ids | |
Upstream gene distance | 2213 |
Downstream gene distance | 1089 |
SNP risk allele | rs5945619-C |
SNPs | rs5945619 |
Merged | 0 |
SNP id current | 5945619 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.36 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.07-1.31] |
Platform | Illumina [541129] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000152 |