SNP Detail For rs594442
1.Mapping Information
Human SNP ID rs594442
Human chromosome chr6
Human SNP position 93138166
Pig chromosome chr1
Pig SNP position 68154016
2.Annotation Information
PubMed ID21546767
JournalAm J Nephrol
Linkwww.ncbi.nlm.nih.gov/pubmed/21546767
StudyGenome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.
Disease/TraitDialysis-related mortality
Initial sample610 African American type 2 diabetes cases
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position93138166
Reported geneEPHA7
Mapped geneCOPS5P1 - EPHA7
Upstream gene id135270
Downstream gene id2045
SNP gene ids
Upstream gene distance45180
Downstream gene distance101854
SNP risk allelers594442-?
SNPsrs594442
Merged0
SNP id current594442
Contextintergenic_variant
Intergenic1
Allele frequency0.05
P value0.000001
Pvalue mlog6
P value text
Or beta1.99
%95 Ci[1.50-2.64]
PlatformAffymetrix [832357]
CNVN
Mapped traitchronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST001066