SNP Detail For rs59440261
1.Mapping Information
Human SNP ID rs59440261
Human chromosome chr6
Human SNP position 31403294
Pig chromosome chr7
Pig SNP position 27234232
2.Annotation Information
PubMed ID26553974
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/26553974
StudyPolymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.
Disease/TraitSetpoint viral load in HIV-1 infection
Initial sample6,315 European ancestry cases
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31403294
Reported geneHLA-B
Mapped geneMICA
Upstream gene id
Downstream gene id
SNP gene ids100507436
Upstream gene distance
Downstream gene distance
SNP risk allelers59440261-?
SNPsrs59440261
Merged0
SNP id current59440261
Contextintron_variant
Intergenic0
Allele frequencyNR
P value2E-83
Pvalue mlog82.698970004336
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, HIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST003183