Human SNP ID | rs59440261 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31403294 |
Pig chromosome | chr7 |
Pig SNP position | 27234232 |
PubMed ID | 26553974 |
---|---|
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/26553974 |
Study | Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load. |
Disease/Trait | Setpoint viral load in HIV-1 infection |
Initial sample | 6,315 European ancestry cases |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31403294 |
Reported gene | HLA-B |
Mapped gene | MICA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100507436 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs59440261-? |
SNPs | rs59440261 |
Merged | 0 |
SNP id current | 59440261 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 2E-83 |
Pvalue mlog | 82.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST003183 |