SNP Detail For rs5925760
1.Mapping Information
Human SNP ID rs5925760
Human chromosome chrX
Human SNP position 23365327
Pig chromosome chrX
Pig SNP position 20877160
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IFN-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
RegionXp22.11
Chromosome idchrX
Chromosome position23365327
Reported genePTCHD1
Mapped genePTCHD1
Upstream gene id
Downstream gene id
SNP gene ids139411
Upstream gene distance
Downstream gene distance
SNP risk allelers5925760-A
SNPsrs5925760
Merged0
SNP id current5925760
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000001
Pvalue mlog7
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001538