SNP Detail For rs5910235
1.Mapping Information
Human SNP ID rs5910235
Human chromosome chrX
Human SNP position 117735951
Pig chromosome chrX
Pig SNP position 115127597
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (5-HIAA/ MHPG Ratio)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
RegionXq24
Chromosome idchrX
Chromosome position117735951
Reported geneintergenic
Mapped geneLOC100126447 - KLHL13
Upstream gene id100126447
Downstream gene id90293
SNP gene ids
Upstream gene distance918091
Downstream gene distance161862
SNP risk allelers5910235-G
SNPsrs5910235
Merged0
SNP id current5910235
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.2785
%95 Ciunit increase
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement, 5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001821