Human SNP ID | rs5910235 |
---|---|
Human chromosome | chrX |
Human SNP position | 117735951 |
Pig chromosome | chrX |
Pig SNP position | 115127597 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (5-HIAA/ MHPG Ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | Xq24 |
Chromosome id | chrX |
Chromosome position | 117735951 |
Reported gene | intergenic |
Mapped gene | LOC100126447 - KLHL13 |
Upstream gene id | 100126447 |
Downstream gene id | 90293 |
SNP gene ids | |
Upstream gene distance | 918091 |
Downstream gene distance | 161862 |
SNP risk allele | rs5910235-G |
SNPs | rs5910235 |
Merged | 0 |
SNP id current | 5910235 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 0.2785 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | MHPG measurement, 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001821 |