SNP Detail For rs590856
1.Mapping Information
Human SNP ID rs590856
Human chromosome chr6
Human SNP position 139523292
Pig chromosome chr1
Pig SNP position 28162367
2.Annotation Information
PubMed ID23222517
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/23222517
StudySeventy-five genetic loci influencing the human red blood cell.
Disease/TraitRed blood cell traits
Initial sample62,553 European ancestry individuals, 9,308 South Asian ancestry individuals
Replication sample63,506 European ancestry individuals
Region6q24.1
Chromosome idchr6
Chromosome position139523292
Reported geneCITED2, LOC645434
Mapped geneLOC645434 - LOC105378023
Upstream gene id645434
Downstream gene id105378023
SNP gene ids
Upstream gene distance48696
Downstream gene distance2212
SNP risk allelers590856-G
SNPsrs590856
Merged0
SNP id current590856
Contextintergenic_variant
Intergenic1
Allele frequency0.43
P value5E-36
Pvalue mlog35.3010299956639
P value text(EA, MCV)
Or beta0.313
%95 Ci[0.26-0.36] unit increase
PlatformAffymetrix, Illumina, Perlegen [2711806] (imputed)
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST001765