Human SNP ID | rs59072263 |
---|---|
Human chromosome | chr7 |
Human SNP position | 8112437 |
Pig chromosome | chr9 |
Pig SNP position | 85967698 |
PubMed ID | 23836780 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23836780 |
Study | Genome-wide association study of intraocular pressure identifies the GLCCI1/ICA1 region as a glaucoma susceptibility locus. |
Disease/Trait | Intraocular pressure |
Initial sample | 2,175 European ancestry individuals |
Replication sample | 4,866 European ancestry individuals |
Region | 7p21.3 |
Chromosome id | chr7 |
Chromosome position | 8112437 |
Reported gene | GLCCI1, ICA1 |
Mapped gene | LOC105375142 - ICA1 |
Upstream gene id | 105375142 |
Downstream gene id | 3382 |
SNP gene ids | |
Upstream gene distance | 16756 |
Downstream gene distance | 747 |
SNP risk allele | rs59072263-G |
SNPs | rs59072263 |
Merged | 0 |
SNP id current | 59072263 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.88 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.45 |
%95 Ci | [0.29-0.61] unit increase |
Platform | Illumina [6235970] |
CNV | N |
Mapped trait | intraocular pressure measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004695 |
Study accession | GCST002089 |