Human SNP ID | rs589249 |
---|---|
Human chromosome | chr1 |
Human SNP position | 36696751 |
Pig chromosome | chr6 |
Pig SNP position | 85830388 |
PubMed ID | 23894747 |
---|---|
Journal | JAMA Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23894747 |
Study | A comprehensive family-based replication study of schizophrenia genes. |
Disease/Trait | Schizophrenia |
Initial sample | 11,185 European ancestry cases, 10,768 European ancestry controls |
Replication sample | 1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals |
Region | 1p34.3 |
Chromosome id | chr1 |
Chromosome position | 36696751 |
Reported gene | GRIK3 |
Mapped gene | LOC105378648 - GRIK3 |
Upstream gene id | 105378648 |
Downstream gene id | 2899 |
SNP gene ids | |
Upstream gene distance | 1784 |
Downstream gene distance | 98776 |
SNP risk allele | rs589249-G |
SNPs | rs589249 |
Merged | 0 |
SNP id current | 589249 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.64 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.2 |
%95 Ci | [NR] |
Platform | NR [1085772] (imputed) |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001851 |