SNP Detail For rs589249
1.Mapping Information
Human SNP ID rs589249
Human chromosome chr1
Human SNP position 36696751
Pig chromosome chr6
Pig SNP position 85830388
2.Annotation Information
PubMed ID23894747
JournalJAMA Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23894747
StudyA comprehensive family-based replication study of schizophrenia genes.
Disease/TraitSchizophrenia
Initial sample11,185 European ancestry cases, 10,768 European ancestry controls
Replication sample1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals
Region1p34.3
Chromosome idchr1
Chromosome position36696751
Reported geneGRIK3
Mapped geneLOC105378648 - GRIK3
Upstream gene id105378648
Downstream gene id2899
SNP gene ids
Upstream gene distance1784
Downstream gene distance98776
SNP risk allelers589249-G
SNPsrs589249
Merged0
SNP id current589249
Contextintergenic_variant
Intergenic1
Allele frequency0.64
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.2
%95 Ci[NR]
PlatformNR [1085772] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001851