SNP Detail For rs588136
1.Mapping Information
Human SNP ID rs588136
Human chromosome chr15
Human SNP position 58438299
Pig chromosome chr1
Pig SNP position 125660897
2.Annotation Information
PubMed ID24023260
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24023260
StudyGenetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.
Disease/TraitLipid traits
Initial sample1,782 Filipino ancestry mothers
Replication sample1,719 Filipino ancestry offsprings
Region15q21.3
Chromosome idchr15
Chromosome position58438299
Reported geneLIPC
Mapped geneLOC101928694, LIPC
Upstream gene id
Downstream gene id
SNP gene ids101928694, 3990
Upstream gene distance
Downstream gene distance
SNP risk allelers588136-?
SNPsrs588136
Merged0
SNP id current588136
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.000000000002
Pvalue mlog11.698970004336
P value text(HDL-C)
Or beta0.05
%95 Ci[0.030-0.070] unit decrease
PlatformAffymetrix [~ 3700000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002174
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region15q21.3
Chromosome idchr15
Chromosome position58438299
Reported geneLIPC
Mapped geneLOC101928694, LIPC
Upstream gene id
Downstream gene id
SNP gene ids101928694, 3990
Upstream gene distance
Downstream gene distance
SNP risk allelers588136-T
SNPsrs588136
Merged0
SNP id current588136
Contextintron_variant
Intergenic0
Allele frequency0.8
P value0.000000000008
Pvalue mlog11.096910013008
P value text(1-stearoylglycerophosphoethanolamine)
Or beta0.029
%95 Ci[0.021-0.037] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443