Human SNP ID | rs588136 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58438299 |
Pig chromosome | chr1 |
Pig SNP position | 125660897 |
PubMed ID | 24023260 |
---|---|
Journal | J Lipid Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24023260 |
Study | Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels. |
Disease/Trait | Lipid traits |
Initial sample | 1,782 Filipino ancestry mothers |
Replication sample | 1,719 Filipino ancestry offsprings |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58438299 |
Reported gene | LIPC |
Mapped gene | LOC101928694, LIPC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928694, 3990 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs588136-? |
SNPs | rs588136 |
Merged | 0 |
SNP id current | 588136 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.69 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | (HDL-C) |
Or beta | 0.05 |
%95 Ci | [0.030-0.070] unit decrease |
Platform | Affymetrix [~ 3700000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002174 |
PubMed ID | 24816252 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58438299 |
Reported gene | LIPC |
Mapped gene | LOC101928694, LIPC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928694, 3990 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs588136-T |
SNPs | rs588136 |
Merged | 0 |
SNP id current | 588136 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.8 |
P value | 0.000000000008 |
Pvalue mlog | 11.096910013008 |
P value text | (1-stearoylglycerophosphoethanolamine) |
Or beta | 0.029 |
%95 Ci | [0.021-0.037] unit decrease |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |