Human SNP ID | rs58649573 |
---|---|
Human chromosome | chr9 |
Human SNP position | 124005148 |
Pig chromosome | chr1 |
Pig SNP position | 298735446 |
PubMed ID | 25456346 |
---|---|
Journal | Psychoneuroendocrinology |
Link | www.ncbi.nlm.nih.gov/pubmed/25456346 |
Study | Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene. |
Disease/Trait | Post-traumatic stress disorder |
Initial sample | 940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls |
Replication sample | 313 European ancestry cases, 178 European ancestry trauma-exposed controls |
Region | 9q33.3 |
Chromosome id | chr9 |
Chromosome position | 124005148 |
Reported gene | LHX2 |
Mapped gene | LOC105376267 - LOC100505588 |
Upstream gene id | 105376267 |
Downstream gene id | 100505588 |
SNP gene ids | |
Upstream gene distance | 5771 |
Downstream gene distance | 2527 |
SNP risk allele | rs58649573-T |
SNPs | rs58649573 |
Merged | 1 |
SNP id current | 58649573 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.441 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (African American) |
Or beta | 5.277 |
%95 Ci | [4.62-5.93] |
Platform | Illumina [21693469] (imputed) |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002681 |