SNP Detail For rs58603829
1.Mapping Information
Human SNP ID rs58603829
Human chromosome chr11
Human SNP position 117980337
Pig chromosome chr9
Pig SNP position 50361811
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position117980337
Reported geneIL10RA
Mapped geneTMPRSS13 - IL10RA
Upstream gene id84000
Downstream gene id3587
SNP gene ids
Upstream gene distance50884
Downstream gene distance6054
SNP risk allelers58603829-A
SNPsrs58603829
Merged0
SNP id current58603829
Contextregulatory_region_variant
Intergenic1
Allele frequency0.028
P value0.000006
Pvalue mlog5.22184874961635
P value text(Folate )
Or beta0.03
%95 Ci[NR] nmol/L increase
PlatformIllumina [899892]
CNVN
Mapped traitfolic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005111
Study accessionGCST001762