Human SNP ID | rs583583 |
---|---|
Human chromosome | chr1 |
Human SNP position | 147611315 |
Pig chromosome | chr4 |
Pig SNP position | 109820186 |
PubMed ID | 23382809 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23382809 |
Study | BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies. |
Disease/Trait | Schizophrenia (negative symptoms) |
Initial sample | 1,774 European ancestry cases, 2,726 European ancestry controls |
Replication sample | |
Region | 1q21.2 |
Chromosome id | chr1 |
Chromosome position | 147611315 |
Reported gene | BCL9 |
Mapped gene | BCL9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 607 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs583583-A |
SNPs | rs583583 |
Merged | 0 |
SNP id current | 583583 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.3 |
%95 Ci | [NR] |
Platform | Affymetrix [729454] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001836 |