SNP Detail For rs583583
1.Mapping Information
Human SNP ID rs583583
Human chromosome chr1
Human SNP position 147611315
Pig chromosome chr4
Pig SNP position 109820186
2.Annotation Information
PubMed ID23382809
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23382809
StudyBCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.
Disease/TraitSchizophrenia (negative symptoms)
Initial sample1,774 European ancestry cases, 2,726 European ancestry controls
Replication sample
Region1q21.2
Chromosome idchr1
Chromosome position147611315
Reported geneBCL9
Mapped geneBCL9
Upstream gene id
Downstream gene id
SNP gene ids607
Upstream gene distance
Downstream gene distance
SNP risk allelers583583-A
SNPsrs583583
Merged0
SNP id current583583
Contextintron_variant
Intergenic0
Allele frequency0.28
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.3
%95 Ci[NR]
PlatformAffymetrix [729454]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001836