SNP Detail For rs57917647
1.Mapping Information
Human SNP ID rs57917647
Human chromosome chr5
Human SNP position 153124378
Pig chromosome chr16
Pig SNP position 75852560
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region5q33.1
Chromosome idchr5
Chromosome position153124378
Reported geneNR
Mapped geneLINC01470 - GRIA1
Upstream gene id101927134
Downstream gene id2890
SNP gene ids
Upstream gene distance152029
Downstream gene distance365318
SNP risk allelers57917647-?
SNPsrs57917647
Merged0
SNP id current57917647
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279