SNP Detail For rs577969
1.Mapping Information
Human SNP ID rs577969
Human chromosome chr10
Human SNP position 98531419
Pig chromosome chr14
Pig SNP position 119184019
2.Annotation Information
PubMed ID23793025
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23793025
StudyGenome-wide meta-analysis identifies new susceptibility loci for migraine.
Disease/TraitMigraine
Initial sample23,285 European ancestry cases, 95,425 European ancestry controls
Replication sampleNA
Region10q24.2
Chromosome idchr10
Chromosome position98531419
Reported geneintergenic
Mapped geneHPSE2
Upstream gene id
Downstream gene id
SNP gene ids60495
Upstream gene distance
Downstream gene distance
SNP risk allelers577969-T
SNPsrs577969
Merged0
SNP id current577969
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.13
%95 Ci[1.07-1.19]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST002081