Human SNP ID | rs577948 |
---|---|
Human chromosome | chr11 |
Human SNP position | 122159482 |
Pig chromosome | chr9 |
Pig SNP position | 54390219 |
PubMed ID | 19779542 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19779542 |
Study | A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1. |
Disease/Trait | Myopia (pathological) |
Initial sample | 297 Japanese ancestry cases, 934 Japanese ancestry controls |
Replication sample | 533 Japanese ancestry cases, 977 Japanese ancestry controls |
Region | 11q24.1 |
Chromosome id | chr11 |
Chromosome position | 122159482 |
Reported gene | LOC399959, BLID |
Mapped gene | MIR100HG |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 399959 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs577948-G |
SNPs | rs577948 |
Merged | 0 |
SNP id current | 577948 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.52 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.21-1.54] |
Platform | Illumina [411777] |
CNV | N |
Mapped trait | pathological myopia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004207 |
Study accession | GCST000491 |