SNP Detail For rs577948
1.Mapping Information
Human SNP ID rs577948
Human chromosome chr11
Human SNP position 122159482
Pig chromosome chr9
Pig SNP position 54390219
2.Annotation Information
PubMed ID19779542
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19779542
StudyA genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1.
Disease/TraitMyopia (pathological)
Initial sample297 Japanese ancestry cases, 934 Japanese ancestry controls
Replication sample533 Japanese ancestry cases, 977 Japanese ancestry controls
Region11q24.1
Chromosome idchr11
Chromosome position122159482
Reported geneLOC399959, BLID
Mapped geneMIR100HG
Upstream gene id
Downstream gene id
SNP gene ids399959
Upstream gene distance
Downstream gene distance
SNP risk allelers577948-G
SNPsrs577948
Merged0
SNP id current577948
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.37
%95 Ci[1.21-1.54]
PlatformIllumina [411777]
CNVN
Mapped traitpathological myopia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004207
Study accessionGCST000491