SNP Detail For rs576523
1.Mapping Information
Human SNP ID rs576523
Human chromosome chr1
Human SNP position 160776286
Pig chromosome chr4
Pig SNP position 97499568
2.Annotation Information
PubMed ID22864933
JournalCancer
Linkwww.ncbi.nlm.nih.gov/pubmed/22864933
StudyIdentification of novel germline polymorphisms governing capecitabine sensitivity.
Disease/TraitCapecitabine sensitivity
Initial sampleUp to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position160776286
Reported geneintergenic
Mapped geneLOC105371470
Upstream gene id
Downstream gene id
SNP gene ids105371470
Upstream gene distance
Downstream gene distance
SNP risk allelers576523-?
SNPsrs576523
Merged0
SNP id current576523
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformNR [~ 2000000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001368