SNP Detail For rs5762430
1.Mapping Information
Human SNP ID rs5762430
Human chromosome chr22
Human SNP position 27982484
Pig chromosome chr14
Pig SNP position 48215188
2.Annotation Information
PubMed ID21552555
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21552555
StudyA genome-wide association study on obesity and obesity-related traits.
Disease/TraitObesity
Initial sample520 European ancestry cases, 540 European ancestry controls
Replication sample1,196 European ancestry individuals
Region22q12.1
Chromosome idchr22
Chromosome position27982484
Reported genePITPNB
Mapped geneTTC28, TTC28-AS1
Upstream gene id
Downstream gene id
SNP gene ids23331, 284900
Upstream gene distance
Downstream gene distance
SNP risk allelers5762430-?
SNPsrs5762430
Merged0
SNP id current5762430
Contextsynonymous_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text(HIP)
Or beta
%95 Ci
PlatformIllumina [~ 550000]
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001057