Human SNP ID | rs5756506 |
---|---|
Human chromosome | chr22 |
Human SNP position | 37071352 |
Pig chromosome | chr5 |
Pig SNP position | 8298338 |
PubMed ID | 19820697 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19820697 |
Study | A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. |
Disease/Trait | Hematological parameters |
Initial sample | 4,627 European ancestry individuals |
Replication sample | 9,316 European ancestry individuals |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 37071352 |
Reported gene | TMPRSS6 |
Mapped gene | TMPRSS6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 164656 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5756506-C |
SNPs | rs5756506 |
Merged | 0 |
SNP id current | 5756506 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (MCH) |
Or beta | 0.14 |
%95 Ci | [0.10-0.18] pg increase |
Platform | Affymetrix, Illumina [~ 2110000] (imputed) |
CNV | N |
Mapped trait | mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST000498 |