SNP Detail For rs5756504
1.Mapping Information
Human SNP ID rs5756504
Human chromosome chr22
Human SNP position 37071230
Pig chromosome chr5
Pig SNP position 8298448
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitHematological and biochemical traits
Initial sampleUp to 14,402 Japanese individuals
Replication sampleNA
Region22q12.3
Chromosome idchr22
Chromosome position37071230
Reported geneTMPRSS6
Mapped geneTMPRSS6
Upstream gene id
Downstream gene id
SNP gene ids164656
Upstream gene distance
Downstream gene distance
SNP risk allelers5756504-T
SNPsrs5756504
Merged0
SNP id current5756504
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(Hb)
Or beta0.076
%95 Ci[0.052-0.1] unit increase
PlatformIllumina [561583]
CNVN
Mapped traithemoglobin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509
Study accessionGCST000583