Human SNP ID | rs5753037 |
---|---|
Human chromosome | chr22 |
Human SNP position | 30185733 |
Pig chromosome | chr14 |
Pig SNP position | 50209429 |
PubMed ID | 19430480 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19430480 |
Study | Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 7,514 cases, 9,045 controls |
Replication sample | 4,267 cases, 4,670 controls, 4,342 trios from 2,319 families |
Region | 22q12.2 |
Chromosome id | chr22 |
Chromosome position | 30185733 |
Reported gene | intergenic |
Mapped gene | LOC105372988, HORMAD2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372988, 150280 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5753037-T |
SNPs | rs5753037 |
Merged | 0 |
SNP id current | 5753037 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.0000000000000003 |
Pvalue mlog | 15.5228787452803 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.04-1.17] |
Platform | Affymetrix, Illumina [841622] (imputed) |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000392 |