SNP Detail For rs5753037
1.Mapping Information
Human SNP ID rs5753037
Human chromosome chr22
Human SNP position 30185733
Pig chromosome chr14
Pig SNP position 50209429
2.Annotation Information
PubMed ID19430480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19430480
StudyGenome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample7,514 cases, 9,045 controls
Replication sample4,267 cases, 4,670 controls, 4,342 trios from 2,319 families
Region22q12.2
Chromosome idchr22
Chromosome position30185733
Reported geneintergenic
Mapped geneLOC105372988, HORMAD2
Upstream gene id
Downstream gene id
SNP gene ids105372988, 150280
Upstream gene distance
Downstream gene distance
SNP risk allelers5753037-T
SNPsrs5753037
Merged0
SNP id current5753037
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.0000000000000003
Pvalue mlog15.5228787452803
P value text
Or beta1.1
%95 Ci[1.04-1.17]
PlatformAffymetrix, Illumina [841622] (imputed)
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000392