SNP Detail For rs5752209
1.Mapping Information
Human SNP ID rs5752209
Human chromosome chr22
Human SNP position 25793690
Pig chromosome chr14
Pig SNP position 46320494
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region22q12.1
Chromosome idchr22
Chromosome position25793690
Reported geneNR
Mapped geneMYO18B
Upstream gene id
Downstream gene id
SNP gene ids84700
Upstream gene distance
Downstream gene distance
SNP risk allelers5752209-C
SNPsrs5752209
Merged0
SNP id current5752209
Contextintron_variant
Intergenic0
Allele frequency0.9844
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Trans/trans-18:2, EA)
Or beta0.01
%95 Ci[0.0061-0.0139] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721