SNP Detail For rs575134
1.Mapping Information
Human SNP ID rs575134
Human chromosome chr11
Human SNP position 62693757
Pig chromosome chr2
Pig SNP position 8407644
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)
Initial sample8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region11q12.3
Chromosome idchr11
Chromosome position62693757
Reported geneBSCL2
Mapped geneBSCL2, HNRNPUL2-BSCL2
Upstream gene id
Downstream gene id
SNP gene ids26580, 100534595
Upstream gene distance
Downstream gene distance
SNP risk allelers575134-?
SNPsrs575134
Merged0
SNP id current575134
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text(Hispanic)
Or beta
%95 Ci
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002363