SNP Detail For rs5750250
1.Mapping Information
Human SNP ID rs5750250
Human chromosome chr22
Human SNP position 36312438
Pig chromosome chr5
Pig SNP position 9103612
2.Annotation Information
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region22q12.3
Chromosome idchr22
Chromosome position36312438
Reported geneMYH9
Mapped geneMYH9
Upstream gene id
Downstream gene id
SNP gene ids4627
Upstream gene distance
Downstream gene distance
SNP risk allelers5750250-G
SNPsrs5750250
Merged
SNP id current5750250
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(additive )
Or beta1.27
%95 Ci[1.16-1.38]
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098
PubMed ID26305897
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26305897
StudyGenome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).
Disease/TraitDiabetic kidney disease
Initial sample1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia
Replication sample950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu
Region22q12.3
Chromosome idchr22
Chromosome position36312438
Reported geneMYH9
Mapped geneMYH9
Upstream gene id
Downstream gene id
SNP gene ids4627
Upstream gene distance
Downstream gene distance
SNP risk allelers5750250-G
SNPsrs5750250
Merged
SNP id current5750250
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.00000008
Pvalue mlog7.09691001300805
P value text(AA, additive )
Or beta1.27
%95 Ci[1.16-1.38]
PlatformAffymetrix [NR]
CNVN
Mapped traitdiabetic nephropathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000401
Study accessionGCST003098