Human SNP ID | rs5750250 |
---|---|
Human chromosome | chr22 |
Human SNP position | 36312438 |
Pig chromosome | chr5 |
Pig SNP position | 9103612 |
PubMed ID | 26305897 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26305897 |
Study | Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND). |
Disease/Trait | Diabetic kidney disease |
Initial sample | 1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia |
Replication sample | 950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 36312438 |
Reported gene | MYH9 |
Mapped gene | MYH9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4627 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5750250-G |
SNPs | rs5750250 |
Merged | |
SNP id current | 5750250 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (additive ) |
Or beta | 1.27 |
%95 Ci | [1.16-1.38] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | diabetic nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000401 |
Study accession | GCST003098 |
PubMed ID | 26305897 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26305897 |
Study | Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND). |
Disease/Trait | Diabetic kidney disease |
Initial sample | 1,564 African American cases, 369 African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry dia |
Replication sample | 950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 Eu |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 36312438 |
Reported gene | MYH9 |
Mapped gene | MYH9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4627 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5750250-G |
SNPs | rs5750250 |
Merged | |
SNP id current | 5750250 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.52 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (AA, additive ) |
Or beta | 1.27 |
%95 Ci | [1.16-1.38] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | diabetic nephropathy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000401 |
Study accession | GCST003098 |