SNP Detail For rs5746647
1.Mapping Information
Human SNP ID rs5746647
Human chromosome chr22
Human SNP position 16576248
Pig chromosome chr13
Pig SNP position 126397929
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 viral setpoint
Initial sample496 African ancestry cases
Replication sampleNA
Region22q11.1
Chromosome idchr22
Chromosome position16576248
Reported geneKB-67B5.12
Mapped geneACTR3BP6 - KCNMB3P1
Upstream gene id644773
Downstream gene id27093
SNP gene ids
Upstream gene distance87912
Downstream gene distance4518
SNP risk allelers5746647-?
SNPsrs5746647
Merged0
SNP id current5746647
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST001352