Human SNP ID | rs5746647 |
---|---|
Human chromosome | chr22 |
Human SNP position | 16576248 |
Pig chromosome | chr13 |
Pig SNP position | 126397929 |
PubMed ID | 22174851 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22174851 |
Study | Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. |
Disease/Trait | HIV-1 viral setpoint |
Initial sample | 496 African ancestry cases |
Replication sample | NA |
Region | 22q11.1 |
Chromosome id | chr22 |
Chromosome position | 16576248 |
Reported gene | KB-67B5.12 |
Mapped gene | ACTR3BP6 - KCNMB3P1 |
Upstream gene id | 644773 |
Downstream gene id | 27093 |
SNP gene ids | |
Upstream gene distance | 87912 |
Downstream gene distance | 4518 |
SNP risk allele | rs5746647-? |
SNPs | rs5746647 |
Merged | 0 |
SNP id current | 5746647 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [990115] |
CNV | N |
Mapped trait | HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST001352 |