Human SNP ID | rs5745568 |
---|---|
Human chromosome | chr6 |
Human SNP position | 33580617 |
Pig chromosome | chr7 |
Pig SNP position | 34279341 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Platelet count |
Initial sample | 14,806 Japanese ancestry individuals |
Replication sample | NA |
Region | 6p21.31 |
Chromosome id | chr6 |
Chromosome position | 33580617 |
Reported gene | BAK1 |
Mapped gene | BAK1 - GGNBP1 |
Upstream gene id | 578 |
Downstream gene id | 449520 |
SNP gene ids | |
Upstream gene distance | 318 |
Downstream gene distance | 3082 |
SNP risk allele | rs5745568-T |
SNPs | rs5745568 |
Merged | 0 |
SNP id current | 5745568 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.063-0.117] unit increase |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | platelet count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004309 |
Study accession | GCST000580 |