SNP Detail For rs5745568
1.Mapping Information
Human SNP ID rs5745568
Human chromosome chr6
Human SNP position 33580617
Pig chromosome chr7
Pig SNP position 34279341
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitPlatelet count
Initial sample14,806 Japanese ancestry individuals
Replication sampleNA
Region6p21.31
Chromosome idchr6
Chromosome position33580617
Reported geneBAK1
Mapped geneBAK1 - GGNBP1
Upstream gene id578
Downstream gene id449520
SNP gene ids
Upstream gene distance318
Downstream gene distance3082
SNP risk allelers5745568-T
SNPsrs5745568
Merged0
SNP id current5745568
Contextintron_variant
Intergenic1
Allele frequency0.23
P value0.00000000007
Pvalue mlog10.1549019599857
P value text
Or beta0.09
%95 Ci[0.063-0.117] unit increase
PlatformIllumina [561583]
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST000580