SNP Detail For rs574367
1.Mapping Information
Human SNP ID rs574367
Human chromosome chr1
Human SNP position 177904075
Pig chromosome chr9
Pig SNP position 131308765
2.Annotation Information
PubMed ID24861553
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24861553
StudyMeta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.
Disease/TraitBody mass index
Initial sample82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals
Replication sampleUp to 47,352 East Asian ancestry individuals
Region1q25.2
Chromosome idchr1
Chromosome position177904075
Reported geneSEC16B
Mapped geneLOC105371627 - SEC16B
Upstream gene id105371627
Downstream gene id89866
SNP gene ids
Upstream gene distance78503
Downstream gene distance25032
SNP risk allelers574367-T
SNPsrs574367
Merged0
SNP id current574367
Contextintergenic_variant
Intergenic1
Allele frequency0.21
P value2E-19
Pvalue mlog18.698970004336
P value text
Or beta0.058
%95 Ci[0.045-0.071] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002461